STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31885.1Putative aspartyl/asparaginyl beta-hydroxylase; [R] COG0457 FOG: TPR repeat. (391 aa)    
Predicted Functional Partners:
EED31884.1
Hypothetical protein.
       0.775
EED32046.1
[M] COG1560 Lauroyl/myristoyl acyltransferase.
     
 0.624
NOR53_849
[S] COG2035 Predicted membrane protein.
     
 0.584
EED31574.1
[O] COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
  
  
 0.561
EED31887.1
[R] COG0457 FOG: TPR repeat.
 
    0.543
waaM
[M] COG1560 Lauroyl/myristoyl acyltransferase.
     
 0.507
EED31888.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.499
EED31883.1
Chain A, D-3-Phosphoglycerate Dehydrogenase; [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.416
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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