EED32125.1 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EED32125.1

[T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family. (127 aa)

Predicted Functional Partners:

EED32126.1

0.999

NOR53_215

0.971

EED31684.1

0.969

EED33682.1

0.965

EED32435.1

0.920

EED32436.1

0.918

EED33309.1

0.897

EED32434.1

0.897

EED31237.1

0.827

EED31683.1

0.788

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED31237.1	EED32125.1	NOR53_2651	NOR53_2971	Transposase, Mutator family; Required for the transposition of the insertion element.	[T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	0.827
EED31237.1	EED32435.1	NOR53_2651	NOR53_1051	Transposase, Mutator family; Required for the transposition of the insertion element.	[E] COG1126 ABC-type polar amino acid transport system, ATPase component.	0.953
EED31237.1	EED32436.1	NOR53_2651	NOR53_1575	Transposase, Mutator family; Required for the transposition of the insertion element.	ABC transporter permease protein; [Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.	0.962
EED31683.1	EED31684.1	NOR53_3695	NOR53_3341	Putative Heme NO binding; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	0.976
EED31683.1	EED32125.1	NOR53_3695	NOR53_2971	Putative Heme NO binding; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	[T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	0.788
EED31683.1	EED32126.1	NOR53_3695	NOR53_3595	Putative Heme NO binding; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Hamp domain protein; [NT] COG0840 Methyl-accepting chemotaxis protein.	0.996
EED31683.1	EED33309.1	NOR53_3695	NOR53_1600	Putative Heme NO binding; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Response regulator receiver protein; [T] COG0784 FOG: CheY-like receiver.	0.831
EED31683.1	EED33682.1	NOR53_3695	NOR53_2196	Putative Heme NO binding; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	[T] COG0642 Signal transduction histidine kinase.	0.847
EED31683.1	NOR53_215	NOR53_3695	NOR53_215	Putative Heme NO binding; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	[T] COG0642 Signal transduction histidine kinase.	0.847
EED31684.1	EED31683.1	NOR53_3341	NOR53_3695	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	Putative Heme NO binding; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.976
EED31684.1	EED32125.1	NOR53_3341	NOR53_2971	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	[T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	0.969
EED31684.1	EED32126.1	NOR53_3341	NOR53_3595	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	Hamp domain protein; [NT] COG0840 Methyl-accepting chemotaxis protein.	0.999
EED31684.1	EED33309.1	NOR53_3341	NOR53_1600	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	Response regulator receiver protein; [T] COG0784 FOG: CheY-like receiver.	0.978
EED31684.1	EED33682.1	NOR53_3341	NOR53_2196	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	[T] COG0642 Signal transduction histidine kinase.	0.999
EED31684.1	NOR53_215	NOR53_3341	NOR53_215	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	[T] COG0642 Signal transduction histidine kinase.	0.999
EED32125.1	EED31237.1	NOR53_2971	NOR53_2651	[T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	Transposase, Mutator family; Required for the transposition of the insertion element.	0.827
EED32125.1	EED31683.1	NOR53_2971	NOR53_3695	[T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	Putative Heme NO binding; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.788
EED32125.1	EED31684.1	NOR53_2971	NOR53_3341	[T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	0.969
EED32125.1	EED32126.1	NOR53_2971	NOR53_3595	[T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	Hamp domain protein; [NT] COG0840 Methyl-accepting chemotaxis protein.	0.999
EED32125.1	EED32434.1	NOR53_2971	NOR53_2325	[T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	Paraquat-inducible protein B; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.897