EED31750.1 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EED31750.1

Sigma-54 factor, interaction region; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain. (445 aa)

Predicted Functional Partners:

EED31752.1

0.901

EED31751.1

0.897

EED31684.1

0.876

rpoN

0.842

EED34033.1

0.836

NOR53_215

0.822

glnL

0.760

EED33682.1

0.754

EED31642.1

0.683

EED31395.1

0.678

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED31395.1	EED31642.1	NOR53_2865	NOR53_3451	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	Hdod domain family protein; [T] COG1639 Predicted signal transduction protein.	0.749
EED31395.1	EED31684.1	NOR53_2865	NOR53_3341	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	0.953
EED31395.1	EED31750.1	NOR53_2865	NOR53_3012	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	Sigma-54 factor, interaction region; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.	0.678
EED31395.1	EED31752.1	NOR53_2865	NOR53_3327	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	Nitrogen regulation protein NtrB; [T] COG0642 Signal transduction histidine kinase.	0.513
EED31395.1	EED33682.1	NOR53_2865	NOR53_2196	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	[T] COG0642 Signal transduction histidine kinase.	0.956
EED31395.1	EED34033.1	NOR53_2865	NOR53_1346	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	CheB methylesterase/CheR methyltransferase; [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	0.927
EED31395.1	NOR53_215	NOR53_2865	NOR53_215	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	[T] COG0642 Signal transduction histidine kinase.	0.980
EED31395.1	glnL	NOR53_2865	NOR53_3028	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	Nitrogen regulation protein NR (II); [T] COG0642 Signal transduction histidine kinase.	0.696
EED31395.1	rpoN	NOR53_2865	NOR53_1750	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.656
EED31642.1	EED31395.1	NOR53_3451	NOR53_2865	Hdod domain family protein; [T] COG1639 Predicted signal transduction protein.	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	0.749
EED31642.1	EED31684.1	NOR53_3451	NOR53_3341	Hdod domain family protein; [T] COG1639 Predicted signal transduction protein.	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	0.950
EED31642.1	EED31750.1	NOR53_3451	NOR53_3012	Hdod domain family protein; [T] COG1639 Predicted signal transduction protein.	Sigma-54 factor, interaction region; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.	0.683
EED31642.1	EED33682.1	NOR53_3451	NOR53_2196	Hdod domain family protein; [T] COG1639 Predicted signal transduction protein.	[T] COG0642 Signal transduction histidine kinase.	0.926
EED31642.1	EED34033.1	NOR53_3451	NOR53_1346	Hdod domain family protein; [T] COG1639 Predicted signal transduction protein.	CheB methylesterase/CheR methyltransferase; [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	0.705
EED31642.1	NOR53_215	NOR53_3451	NOR53_215	Hdod domain family protein; [T] COG1639 Predicted signal transduction protein.	[T] COG0642 Signal transduction histidine kinase.	0.946
EED31642.1	rpoN	NOR53_3451	NOR53_1750	Hdod domain family protein; [T] COG1639 Predicted signal transduction protein.	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.527
EED31684.1	EED31395.1	NOR53_3341	NOR53_2865	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	0.953
EED31684.1	EED31642.1	NOR53_3341	NOR53_3451	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	Hdod domain family protein; [T] COG1639 Predicted signal transduction protein.	0.950
EED31684.1	EED31750.1	NOR53_3341	NOR53_3012	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	Sigma-54 factor, interaction region; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.	0.876
EED31684.1	EED31751.1	NOR53_3341	NOR53_3084	Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.	Sensory box sensor histidine kinase; [T] COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.	0.837