Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED31759.1Cytochrome c-type. (204 aa)    
Predicted Functional Partners:
soxC
[R] COG2041 Sulfite oxidase and related enzymes.
 
 
 0.988
petB
ubiquinol-Cytochrome c reductase, cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 0.982
EED31467.1
[C] COG2863 Cytochrome c553.
  
 
 0.960
EED32279.1
Mo-co oxidoreductase dimerisation domain; [R] COG2041 Sulfite oxidase and related enzymes.
 
 
 0.953
coxB
Cytochrome-c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 0.907
soxY
Sulfur oxidation protein SoxY; [S] COG5501 Predicted secreted protein.
 
  
 0.906
soxB
Sulfur oxidation protein SoxB; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.
 
  
 0.891
soxA
Sulfur oxidation protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.879
EED32280.1
Cytochrome c, class I; [C] COG3245 Cytochrome c5.
 
 
0.864
EED32064.1
[C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
  
 
 0.862
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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