Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED31733.1Patatin; [R] COG1752 Predicted esterase of the alpha-beta hydrolase superfamily. (388 aa)    
Predicted Functional Partners:
EED31734.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.737
NOR53_42
Conserved hypothetical protein.
  
     0.613
phnA
Alkylphosphonate utilization operon protein PhnA; [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism.
       0.491
NOR53_951
[H] COG3201 Nicotinamide mononucleotide transporter.
  
     0.481
EED32070.1
Cytochrome c, class I; [C] COG3245 Cytochrome c5.
  
     0.443
NOR53_712
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.431
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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