STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED32222.1[NU] COG3168 Tfp pilus assembly protein PilP. (177 aa)    
Predicted Functional Partners:
EED32220.1
[NU] COG3166 Tfp pilus assembly protein PilN.
 
 
 0.997
EED32221.1
Type 4 fimbrial biogenesis protein PilO; [NU] COG3167 Tfp pilus assembly protein PilO.
 
 
 0.996
EED32219.1
[NU] COG4972 Tfp pilus assembly protein, ATPase PilM.
 
 
 0.979
EED32223.1
Type IV pilus secretin PilQ; [U] COG4964 Flp pilus assembly protein, secretin CpaC.
 
     0.943
EED32053.1
[S] COG1652 Uncharacterized protein containing LysM domain.
  
 
   0.892
EED33004.1
[NU] COG3215 Tfp pilus assembly protein PilZ.
  
   
 0.804
EED33126.1
LysM domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
    0.771
aroK_1
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.755
NOR53_375
Prokaryotic N-terminal methylation motif domain protein; [NU] COG4970 Tfp pilus assembly protein FimT.
  
  
 0.747
pilF
Type IV pilus biogenesis/stability protein PilW; [R] COG0457 FOG: TPR repeat.
  
   
 0.745
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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