STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaFPolyhydroxyalkanoate synthesis protein PhaF; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (170 aa)    
Predicted Functional Partners:
phaD
[K] COG1309 Transcriptional regulator.
 
     0.900
EED33774.1
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.808
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
   
 0.804
NOR53_215
[T] COG0642 Signal transduction histidine kinase.
   
  0.772
EED34033.1
CheB methylesterase/CheR methyltransferase; [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
  
 
 0.748
EED31835.1
Putative sodium/proline symporter; [S] COG3924 Predicted membrane protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.739
cinA
Competence/damage-inducible protein CinA; [R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.
 
  
  0.736
EED33682.1
[T] COG0642 Signal transduction histidine kinase.
   
  0.726
NOR53_64
[S] COG5481 Uncharacterized conserved small protein containing a coiled-coil domain.
  
     0.717
EED33681.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.684
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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