Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
phaFPolyhydroxyalkanoate synthesis protein PhaF; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (170 aa)    
Predicted Functional Partners:
phaD
[K] COG1309 Transcriptional regulator.
 
     0.902
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
   
 0.824
NOR53_215
[T] COG0642 Signal transduction histidine kinase.
   
 0.791
EED33682.1
[T] COG0642 Signal transduction histidine kinase.
   
 0.761
EED31835.1
Putative sodium/proline symporter; [S] COG3924 Predicted membrane protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.739
NOR53_64
[S] COG5481 Uncharacterized conserved small protein containing a coiled-coil domain.
  
     0.717
EED33681.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.682
EED31435.1
Conserved hypothetical protein.
  
     0.675
NOR53_559
Diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s); [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins.
    
 0.674
NOR53_308
Hypothetical protein.
  
     0.669
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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