STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED32344.1PvdS; [S] COG2326 Uncharacterized conserved protein. (259 aa)    
Predicted Functional Partners:
ppk_2
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
  
 0.759
NOR53_225
[S] COG2841 Uncharacterized protein conserved in bacteria.
   
    0.757
bchE
Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; [C] COG1032 Fe-S oxidoreductase.
   
    0.696
EED32695.1
OmpW family protein; [M] COG3047 Outer membrane protein W.
   
    0.695
bchJ
Bacteriochlorophyll 4-vinyl reductase.
   
    0.693
ppx
[FP] COG0248 Exopolyphosphatase; Belongs to the GppA/Ppx family.
 
 
 0.685
ccoG
Cytochrome c oxidase accessory protein CcoG; [C] COG0348 Polyferredoxin.
   
    0.683
EED32343.1
Hypothetical protein.
       0.526
hemN
Oxygen-independent coproporphyrinogen III oxidase; [KB] COG1243 Histone acetyltransferase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.524
EED31715.1
Hypothetical protein.
   
    0.522
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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