Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NOR53_317Hypothetical protein; [S] COG2308 Uncharacterized conserved protein. (498 aa)    
Predicted Functional Partners:
NOR53_219
[S] COG2307 Uncharacterized protein conserved in bacteria.
    0.996
NOR53_276
[S] COG4307 Uncharacterized protein conserved in bacteria.
 
     0.907
EED33397.1
Transglutaminase family protein; [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
 
    0.816
NOR53_385
20S proteasome, A/B subunit; [O] COG3484 Predicted proteasome-type protease.
 
    0.815
EED32226.1
[E] COG0070 Glutamate synthase domain 3.
     
  0.739
EED33480.1
Glutamate-cysteine ligase, family 2; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
  0.561
NOR53_136
Molydopterin dinucleotide-binding region; [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.521
NOR53_91
Tyrosine decarboxylase 1; [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins.
    
  0.515
pepA
Aminopeptidase A; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
     
  0.511
EED33192.1
Bacterial NAD-glutamate dehydrogenase superfamily protein; [E] COG2902 NAD-specific glutamate dehydrogenase.
     
  0.511
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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