Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED32299.1[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (220 aa)    
Predicted Functional Partners:
waaM
[M] COG1560 Lauroyl/myristoyl acyltransferase.
       0.773
EED32301.1
Conserved hypothetical protein; [S] COG3752 Predicted membrane protein.
       0.648
EED32302.1
Metal-dependent phosphohydrolase, HD subdomain; [R] COG4341 Predicted HD phosphohydrolase.
       0.430
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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