Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED32032.1Methylase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (200 aa)    
Predicted Functional Partners:
EED32031.1
Alpha/beta hydrolase fold-3 domain protein; [P] COG2072 Predicted flavoprotein involved in K+ transport.
       0.783
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.768
EED32030.1
[S] COG3022 Uncharacterized protein conserved in bacteria; Belongs to the UPF0246 family.
       0.642
EED32850.1
Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.
     
  0.513
EED32029.1
Tripartite ATP-independent periplasmic transporter, DctQ component; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
       0.436
EED32028.1
Trap dicarboxylate transporter, dctm subunit; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
       0.436
EED31946.1
[S] COG3146 Uncharacterized protein conserved in bacteria.
 
     0.417
spt
[HE] COG1932 Phosphoserine aminotransferase.
  
  
  0.409
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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