STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31742.1Diguanylate cyclase (ggdef domain); [T] COG2199 FOG: GGDEF domain. (334 aa)    
Predicted Functional Partners:
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
 0.996
EED33682.1
[T] COG0642 Signal transduction histidine kinase.
 
 0.989
NOR53_789
[T] COG2199 FOG: GGDEF domain.
0.978
EED32584.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
 0.969
EED31191.1
[T] COG2200 FOG: EAL domain.
 
 
 0.966
EED32586.1
Adenylate cyclase 1 (ATP pyrophosphate-lyase 1); [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 0.952
EED32126.1
Hamp domain protein; [NT] COG0840 Methyl-accepting chemotaxis protein.
  
 0.949
NOR53_807
Diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor(s); [T] COG2200 FOG: EAL domain.
0.941
NOR53_215
[T] COG0642 Signal transduction histidine kinase.
 
 0.940
NOR53_65
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain.
0.937
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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