STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhaC[C] COG1757 Na+/H+ antiporter. (520 aa)    
Predicted Functional Partners:
EED32178.1
Thioesterase superfamily protein; [R] COG0824 Predicted thioesterase.
       0.789
EED32180.1
[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.562
EED33795.1
[E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
   
    0.545
EED33623.1
Aminotransferase, class I and II; [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.
   
    0.545
EED33411.1
Aminotransferase YbdL; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
   
    0.545
NOR53_990
Aminotransferase, class I and II; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
   
    0.545
NOR53_497
C4-dicarboxylate anaerobic carrier; [C] COG2851 H+/citrate symporter.
 
     0.480
argD
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
     
 0.436
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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