STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_328Transporter, PerM family; [R] COG0628 Predicted permease. (377 aa)    
Predicted Functional Partners:
NOR53_236
Secretion protein HlyD; [V] COG1566 Multidrug resistance efflux pump.
 
    0.930
NOR53_365
Conserved hypothetical protein.
 
     0.894
NOR53_160
RND efflux system, outer membrane lipoprotein, NodT; [MU] COG1538 Outer membrane protein.
 
     0.891
NOR53_297
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.715
EED31092.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.637
EED31086.1
Conserved hypothetical protein.
  
     0.635
EED32482.1
Conserved hypothetical protein.
  
     0.571
EED32313.1
Carbohydrate-binding family V/XII.
  
    0.569
EED31794.1
Lytic transglycosylase, catalytic; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family.
  
     0.560
NOR53_354
Endonuclease/exonuclease/phosphatase; [S] COG4222 Uncharacterized protein conserved in bacteria.
     
 0.515
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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