STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31857.1Tetratricopeptide TPR_2; [R] COG0457 FOG: TPR repeat. (451 aa)    
Predicted Functional Partners:
EED31858.1
Periplasmic protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
   0.946
EED31863.1
TonB system biopolymer transport component; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; overlaps another CDS with the same product name.
 
   0.918
exbD
[U] COG0848 Biopolymer transport protein.
 
 
   0.910
EED31862.1
TonB system biopolymer transport component; [U] COG0811 Biopolymer transport proteins; overlaps another CDS with the same product name.
 
     0.904
EED31860.1
[U] COG0848 Biopolymer transport protein.
 
 
   0.899
EED31861.1
Lipid A export ATP-binding/permease protein MsbA; [U] COG0811 Biopolymer transport proteins.
 
     0.895
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
   
 0.806
NOR53_345
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
 
 
 0.750
NOR53_215
[T] COG0642 Signal transduction histidine kinase.
   
 0.704
NOR53_712
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.704
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.