Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED31857.1Tetratricopeptide TPR_2; [R] COG0457 FOG: TPR repeat. (451 aa)    
Predicted Functional Partners:
EED31858.1
Periplasmic protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
   0.951
EED31863.1
TonB system biopolymer transport component; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; overlaps another CDS with the same product name.
 
   0.926
exbD
[U] COG0848 Biopolymer transport protein.
 
 
   0.912
EED31862.1
TonB system biopolymer transport component; [U] COG0811 Biopolymer transport proteins; overlaps another CDS with the same product name.
 
     0.905
EED31860.1
[U] COG0848 Biopolymer transport protein.
 
 
   0.898
EED31861.1
Lipid A export ATP-binding/permease protein MsbA; [U] COG0811 Biopolymer transport proteins.
 
     0.896
NOR53_345
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
 
 0.845
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
   
 0.787
EED31887.1
[R] COG0457 FOG: TPR repeat.
  
  0.740
EED33331.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 
  0.708
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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