Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EED32264.1Conserved hypothetical protein. (278 aa)    
Predicted Functional Partners:
EED32263.1
Methyltransferase domain family protein; [R] COG0457 FOG: TPR repeat.
       0.762
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
   
 0.633
EED32644.1
Porin.
   
  0.585
NOR53_927
Type V secretory pathway, adhesin AidA; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
  0.585
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
     
 0.549
EED33966.1
ATPase; [U] COG3267 Type II secretory pathway, component ExeA (predicted ATPase).
   
  0.537
EED32815.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
  0.537
pal
OmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
  0.537
EED31433.1
OmpA/MotB domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
  0.537
NOR53_507
Conserved hypothetical protein.
   
  0.537
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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