Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EED32278.1Regulatory protein, ArsR; [K] COG0640 Predicted transcriptional regulators. (101 aa)    
Predicted Functional Partners:
EED32279.1
Mo-co oxidoreductase dimerisation domain; [R] COG2041 Sulfite oxidase and related enzymes.
       0.561
EED32280.1
Cytochrome c, class I; [C] COG3245 Cytochrome c5.
       0.472
EED32277.1
SalD.
       0.463
EED32281.1
Sulfur oxidation protein SoxX; [C] COG2010 Cytochrome c, mono- and diheme variants.
 
     0.456
EED32698.1
[P] COG0474 Cation transport ATPase.
  
  
 0.443
soxY
Sulfur oxidation protein SoxY; [S] COG5501 Predicted secreted protein.
       0.420
EED32968.1
Beta-lactamase domain protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
 
   
 0.408
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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