STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED32219.1[NU] COG4972 Tfp pilus assembly protein, ATPase PilM. (354 aa)    
Predicted Functional Partners:
EED32220.1
[NU] COG3166 Tfp pilus assembly protein PilN.
 
 0.999
EED32221.1
Type 4 fimbrial biogenesis protein PilO; [NU] COG3167 Tfp pilus assembly protein PilO.
 
 
 0.987
EED32222.1
[NU] COG3168 Tfp pilus assembly protein PilP.
 
 
 0.979
EED32223.1
Type IV pilus secretin PilQ; [U] COG4964 Flp pilus assembly protein, secretin CpaC.
 
  
 0.948
EED32053.1
[S] COG1652 Uncharacterized protein containing LysM domain.
  
 
   0.889
EED33004.1
[NU] COG3215 Tfp pilus assembly protein PilZ.
  
   
 0.810
EED31905.1
Twitching motility protein PilT; [NU] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
   
 0.789
EED33837.1
Type IV pilus biogenesis protein PilC; [I] COG0657 Esterase/lipase.
 
 
 
 0.765
aroK_1
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.755
EED33126.1
LysM domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
  
 0.752
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.