STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspJ_2General secretion pathway protein J. (197 aa)    
Predicted Functional Partners:
NOR53_137
General secretion pathway protein I; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.945
gspH_2
General secretion protein H; [NU] COG4970 Tfp pilus assembly protein FimT.
 
     0.939
NOR53_41
Fimbrial assembly protein.
 
  
 0.902
NOR53_121
General secretory pathway protein K.
  
 
 0.863
NOR53_265
Conserved hypothetical protein.
 
     0.812
gspD_2
General secretion pathway protein D; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.784
gspJ_1
General secretion pathway protein J; [U] COG4795 Type II secretory pathway, component PulJ.
 
 0.780
EED31615.1
Conserved hypothetical protein.
  
     0.761
EED34037.1
Conserved hypothetical protein.
  
     0.758
NOR53_192
Hypothetical protein.
  
     0.747
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.