STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31855.1Carotenoid cleavage dioxygenase 1; [Q] COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes. (500 aa)    
Predicted Functional Partners:
EED31856.1
Transcriptional regulator, HxlR family; [K] COG1733 Predicted transcriptional regulators.
 
     0.822
EED31852.1
Thiolase family protein; [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
     0.817
EED31853.1
[IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
   0.665
NOR53_897
[I] COG1562 Phytoene/squalene synthetase.
     
 0.664
xdhB
Xanthine dehydrogenase, molybdopterin binding subunit; [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
   
 
 0.627
EED32771.1
Acyltransferase, putative; [I] COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
     0.604
NOR53_192
Hypothetical protein.
  
  
 0.546
EED31854.1
2-nitropropane dioxygenase, NPD; [R] COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
       0.538
EED31605.1
phytanoyl-CoA dioxygenase (PhyH) family protein; [Q] COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin.
  
   
 0.510
udk
Uridine kinase; [H] COG1072 Panthothenate kinase.
   
 
 0.505
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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