STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppFOligopeptide ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase. (156 aa)    
Predicted Functional Partners:
EED31635.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.998
EED31634.1
Phosphoglycerate mutase 1; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.984
EED31633.1
[E] COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
 
 0.947
EED31632.1
Oligopeptide ABC transporter periplasmic oligopeptide-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 
 0.942
NOR53_304
[R] COG4174 ABC-type uncharacterized transport system, permease component.
 
 
 0.929
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
 
   
0.913
EED32777.1
Lipoprotein-releasing system ATP-binding protein LolD; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
    
0.911
NOR53_52
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.880
NOR53_72
Oligopeptide transport ATP-binding protein OppD; [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
0.852
NOR53_34
[R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 
0.847
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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