Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED32349.1Phenazine biosynthesis PhzC/PhzF protein; [R] COG0384 Predicted epimerase, PhzC/PhzF homolog. (207 aa)    
Predicted Functional Partners:
EED32350.1
Hypothetical protein; [S] COG1262 Uncharacterized conserved protein; protein containing.
       0.809
EED32351.1
Probable methyltransferase; [S] COG4301 Uncharacterized conserved protein.
       0.721
EED32348.1
Glycine betaine/L-proline ABC transporter, permease and substrate-binding protein; [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
       0.543
yehX
ABC transporter ATP-binding protein; [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
       0.426
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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