STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_354Endonuclease/exonuclease/phosphatase; [S] COG4222 Uncharacterized protein conserved in bacteria. (395 aa)    
Predicted Functional Partners:
EED31648.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.697
EED31817.1
Aminotransferase, class V; [E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
    
   0.697
EED31729.1
Pyridoxal phosphate dependent enzyme; [E] COG0520 Selenocysteine lyase.
    
   0.697
EED31840.1
[C] COG0584 Glycerophosphoryl diester phosphodiesterase.
      0.628
NOR53_328
Transporter, PerM family; [R] COG0628 Predicted permease.
     
 0.515
NOR53_160
RND efflux system, outer membrane lipoprotein, NodT; [MU] COG1538 Outer membrane protein.
       0.513
NOR53_236
Secretion protein HlyD; [V] COG1566 Multidrug resistance efflux pump.
       0.513
NOR53_32
Sucrose phosphorylase; [G] COG0366 Glycosidases.
  
 
 0.507
NOR53_365
Conserved hypothetical protein.
       0.444
NOR53_608
Conserved hypothetical protein.
  
     0.433
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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