STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED32188.1Putative Hemerythrin HHE cation binding domain subfamily; [S] COG3945 Uncharacterized conserved protein. (306 aa)    
Predicted Functional Partners:
gspJ_2
General secretion pathway protein J.
  
     0.729
EED34037.1
Conserved hypothetical protein.
  
     0.713
NOR53_41
Fimbrial assembly protein.
  
     0.703
EED31615.1
Conserved hypothetical protein.
  
     0.692
NOR53_265
Conserved hypothetical protein.
  
     0.669
NOR53_137
General secretion pathway protein I; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.629
NOR53_192
Hypothetical protein.
  
     0.599
EED32482.1
Conserved hypothetical protein.
  
     0.594
EED32755.1
PspC domain family protein; [KT] COG1983 Putative stress-responsive transcriptional regulator.
  
     0.586
EED32903.1
[S] COG4805 Uncharacterized protein conserved in bacteria.
  
     0.585
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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