STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31817.1Aminotransferase, class V; [E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes. (582 aa)    
Predicted Functional Partners:
EED31645.1
[R] COG2166 SufE protein probably involved in Fe-S center assembly.
  
 0.918
ttcA
Pyridoxamine 5'-phosphate oxidase; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
 
     0.916
sufC
FeS assembly ATPase SufC; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
  
 0.851
sufB
FeS assembly protein SufB; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.836
sufD
FeS assembly protein SufD; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.800
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.722
EED32130.1
Selenide, water dikinase; [C] COG1252 NADH dehydrogenase, FAD-containing subunit.
    
 0.718
EED31116.1
Endonuclease/exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase.
    
   0.697
NOR53_354
Endonuclease/exonuclease/phosphatase; [S] COG4222 Uncharacterized protein conserved in bacteria.
    
   0.697
EED31816.1
Transcriptional regulator, AsnC family; [K] COG1522 Transcriptional regulators.
       0.541
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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