STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31628.1[M] COG3764 Sortase (surface protein transpeptidase). (207 aa)    
Predicted Functional Partners:
EED31629.1
LPXTG-motif cell wall anchor domain protein.
       0.785
NOR53_501
Hypothetical protein; [GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
     0.598
EED31627.1
Putative calcium binding signal peptide protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.533
EED31626.1
[K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
       0.496
EED31630.1
Conserved hypothetical protein; [M] COG1664 Integral membrane protein CcmA involved in cell shape determination.
       0.432
EED31631.1
Hypothetical protein.
       0.427
EED32014.1
Putative ABC-2 type transporter; [GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
     0.419
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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