Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED31887.1[R] COG0457 FOG: TPR repeat. (610 aa)    
Predicted Functional Partners:
EED32263.1
Methyltransferase domain family protein; [R] COG0457 FOG: TPR repeat.
 
 0.860
EED31767.1
Hypothetical protein; [R] COG0457 FOG: TPR repeat; TPR repeat.
 
  0.849
EED31194.1
Sulfotransferase; [R] COG0457 FOG: TPR repeat.
 
  0.831
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
    
 0.816
EED31886.1
Putative sulfotransferase; [R] COG0457 FOG: TPR repeat.
 
     0.806
ribB
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.796
NOR53_60
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
  0.796
EED31676.1
Sulfotransferase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  0.782
EED33953.1
Sulfotransferase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  0.773
EED32518.1
Transporter; [R] COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
  0.740
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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