Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED31789.1Metallo-beta-lactamase; [R] COG0491 Zn-dependent hydrolases, including glyoxylases. (360 aa)    
Predicted Functional Partners:
EED31790.1
Alpha/beta hydrolase fold-3 domain protein; [I] COG0657 Esterase/lipase.
       0.746
EED33132.1
Thioesterase family protein; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
    0.597
EED31788.1
[C] COG0578 Glycerol-3-phosphate dehydrogenase.
       0.567
cho
[L] COG0322 Nuclease subunit of the excinuclease complex.
    
  0.555
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
     
  0.524
EED32127.1
[E] COG0346 Lactoylglutathione lyase and related lyases.
   
  0.522
rplJ
[J] COG0244 Ribosomal protein L10.
     
  0.515
rrmJ
Ribosomal RNA large subunit methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
     
  0.515
EED32968.1
Beta-lactamase domain protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
    
 0.501
NOR53_31
Putative exoribonuclease 2; [K] COG0557 Exoribonuclease R; Belongs to the RNR ribonuclease family.
     
  0.481
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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