STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31749.1Efflux transporter, RND family, MFP subunit; [M] COG0845 Membrane-fusion protein. (416 aa)    
Predicted Functional Partners:
EED31747.1
ABC transporter, permease protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
 0.956
EED31751.1
Sensory box sensor histidine kinase; [T] COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
 
     0.884
EED31748.1
Macrolide export ATP-binding/permease protein MacB; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.877
EED31752.1
Nitrogen regulation protein NtrB; [T] COG0642 Signal transduction histidine kinase.
 
     0.766
EED31750.1
Sigma-54 factor, interaction region; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
 
     0.644
EED32098.1
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
  
 0.566
NOR53_533
Peptidase M1, membrane alanine aminopeptidase; [E] COG0308 Aminopeptidase N.
  
     0.560
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
  
 0.540
EED32217.1
AcrB/AcrD/AcrF family protein; [V] COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  0.533
EED31570.1
RND transporter, HAE1/HME family, permease protein; [V] COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  0.530
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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