Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED31823.1AraC protein, arabinose-binding/dimerisation; [K] COG2207 AraC-type DNA-binding domain-containing proteins. (299 aa)    
Predicted Functional Partners:
EED32847.1
Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
   0.660
NOR53_883
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.625
mmsA
Methylmalonate-semialdehyde dehydrogenase; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
     0.603
EED32226.1
[E] COG0070 Glutamate synthase domain 3.
     
 0.596
EED31824.1
Hypothetical protein.
       0.590
mmsB
[G] COG1023 Predicted 6-phosphogluconate dehydrogenase; Belongs to the HIBADH-related family.
 
     0.564
EED31139.1
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.551
caiA
[I] COG1960 Acyl-CoA dehydrogenases.
       0.543
EED31819.1
3-hydroxyisobutyryl-coa hydrolase; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
       0.543
EED31820.1
3-hydroxybutyryl-CoA dehydratase (Crotonase); [I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.543
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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