Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EED31715.1Hypothetical protein. (225 aa)    
Predicted Functional Partners:
EED32644.1
Porin.
  
  
 0.806
EED31714.1
LytTr DNA-binding domain family protein; [KT] COG3279 Response regulator of the LytR/AlgR family.
 
     0.750
ccoO
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
    0.689
EED31888.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
     
 0.661
EED31716.1
Hypothetical protein.
       0.655
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
     
 0.593
EED33965.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
   
 
  0.582
EED33931.1
Conserved hypothetical protein.
   
 
  0.582
EED31677.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
   
 
  0.582
NOR53_927
Type V secretory pathway, adhesin AidA; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
 
 0.557
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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