STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED32256.1Twin-arginine translocation pathway signal; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (626 aa)    
Predicted Functional Partners:
EED32255.1
tRNA-(ms(2)io(6)A)-hydroxylase; [FJ] COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA.
       0.773
EED32254.1
Conserved hypothetical protein.
       0.732
EED32257.1
[I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
       0.634
EED31461.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
     0.499
EED32258.1
[G] COG3386 Gluconolactonase.
       0.473
EED33348.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
     0.471
EED31700.1
[GEPR] COG0477 Permeases of the major facilitator superfamily; overlaps another CDS with the same product name.
  
     0.470
EED33568.1
[S] COG4315 Uncharacterized protein conserved in bacteria.
  
     0.459
EED33564.1
Gluconate 2-dehydrogenase cytochrome c subunit; [C] COG2010 Cytochrome c, mono- and diheme variants.
  
     0.429
NOR53_69
Pe_pgrs family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.400
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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