STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EED31609.1Transcription factor jumonji/aspartyl beta-hydroxylase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (340 aa)    
Predicted Functional Partners:
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
   0.867
EED33561.1
SapC family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.782
EED33559.1
Tryptophan halogenase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.779
EED33563.1
TonB-dependent receptor, plug; [P] COG4771 Outer membrane receptor for ferrienterochelin and colicins.
 
     0.778
EED33562.1
Tryptophan halogenase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.776
EED31610.1
[T] COG1639 Predicted signal transduction protein.
       0.689
EED31850.1
Peptidase M28; [R] COG2234 Predicted aminopeptidases.
  
     0.556
fusA_1
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
       0.543
NOR53_908
[P] COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
     0.491
celD
Glucan 1,4-beta-glucosidase; [G] COG1472 Beta-glucosidase-related glycosidases.
 
     0.489
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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