Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EED31863.1TonB system biopolymer transport component; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; overlaps another CDS with the same product name. (261 aa)    
Predicted Functional Partners:
EED31862.1
TonB system biopolymer transport component; [U] COG0811 Biopolymer transport proteins; overlaps another CDS with the same product name.
 
    0.950
EED31861.1
Lipid A export ATP-binding/permease protein MsbA; [U] COG0811 Biopolymer transport proteins.
 
    0.939
EED31858.1
Periplasmic protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
  
  0.937
EED31857.1
Tetratricopeptide TPR_2; [R] COG0457 FOG: TPR repeat.
 
   0.926
exbD
[U] COG0848 Biopolymer transport protein.
 
     0.917
EED31860.1
[U] COG0848 Biopolymer transport protein.
 
     0.908
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
   
 0.799
EED33189.1
Putative TonB-dependent receptor; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.654
NOR53_215
[T] COG0642 Signal transduction histidine kinase.
   
  0.644
EED33258.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
    0.628
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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