STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phrB[L] COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (488 aa)    
Predicted Functional Partners:
cho
[L] COG0322 Nuclease subunit of the excinuclease complex.
     
 0.797
NOR53_59
Photolyase; [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase.
 
   
 0.770
EED32138.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.629
EED31668.1
Conserved hypothetical protein.
       0.540
EED33043.1
[K] COG0789 Predicted transcriptional regulators.
 
  
 0.508
NOR53_862
beta-Ig-H3/fasciclin; [M] COG2335 Secreted and surface protein containing fasciclin-like repeats.
 
  
 0.470
EED31449.1
beta-Ig-H3/fasciclin; [M] COG2335 Secreted and surface protein containing fasciclin-like repeats.
 
  
 0.446
NOR53_221
Superoxide dismutase (Fe); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
   0.406
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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