Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gspH_2General secretion protein H; [NU] COG4970 Tfp pilus assembly protein FimT. (136 aa)    
Predicted Functional Partners:
NOR53_137
General secretion pathway protein I; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.951
gspJ_2
General secretion pathway protein J.
 
     0.939
NOR53_41
Fimbrial assembly protein.
 
    0.907
NOR53_121
General secretory pathway protein K.
  
 
 0.893
gspD_2
General secretion pathway protein D; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
  0.872
gspE_2
General secretion pathway protein E (Type II traffic warden ATPase); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  0.791
gspJ_1
General secretion pathway protein J; [U] COG4795 Type II secretory pathway, component PulJ.
  
 0.749
gspF_2
General secretion pathway protein F; [NU] COG1459 Type II secretory pathway, component PulF.
 
    0.730
gspG_2
General secretion pathway protein G; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.
 
     0.722
pilB
Type IV-A pilus assembly ATPase PilB; [NU] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
  
  0.646
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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