STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_398PEGA domain family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (686 aa)    
Predicted Functional Partners:
NOR53_69
Pe_pgrs family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.890
NOR53_6
Tetratricopeptide repeat domain protein; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
  
 
 0.865
NOR53_199
Putative secreted proteincontaining von Willebrand factor (vWF) type A domain taxon:283942.
 
     0.798
NOR53_416
Secreted protein, containing von Willebrand factor (vWF) type A domain.
 
     0.798
NOR53_257
Hypothetical protein.
       0.775
NOR53_230
Conserved hypothetical protein.
       0.770
EED32351.1
Probable methyltransferase; [S] COG4301 Uncharacterized conserved protein.
  
 
 0.678
ribB
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.547
NOR53_60
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
  0.547
EED31507.1
Transcriptional regulator, LuxR family; [K] COG2771 DNA-binding HTH domain-containing proteins.
 
     0.524
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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