STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspF_2General secretion pathway protein F; [NU] COG1459 Type II secretory pathway, component PulF. (401 aa)    
Predicted Functional Partners:
gspE_2
General secretion pathway protein E (Type II traffic warden ATPase); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.983
pilB
Type IV-A pilus assembly ATPase PilB; [NU] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
 
 0.929
gspE_1
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.929
EED32084.1
Type II secretion system protein E; [U] COG4962 Flp pilus assembly protein, ATPase CpaF.
 
 
 0.929
pilD
Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.858
gspG_2
General secretion pathway protein G; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.
 
  
 0.816
EED31905.1
Twitching motility protein PilT; [NU] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
  
 0.796
EED33177.1
Type II secretion system protein; [U] COG4962 Flp pilus assembly protein, ATPase CpaF.
  
   
 0.781
EED31904.1
Orotate phosphoribosyl transferase; [NU] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
  
   
 0.770
gspH_2
General secretion protein H; [NU] COG4970 Tfp pilus assembly protein FimT.
 
  
 0.729
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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