Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NOR53_421[E] COG0747 ABC-type dipeptide transport system, periplasmic component. (642 aa)    
Predicted Functional Partners:
NOR53_304
[R] COG4174 ABC-type uncharacterized transport system, permease component.
 
 0.989
EED31635.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.958
NOR53_34
[R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 0.957
NOR53_72
Oligopeptide transport ATP-binding protein OppD; [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.956
EED32348.1
Glycine betaine/L-proline ABC transporter, permease and substrate-binding protein; [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
     
 0.945
NOR53_52
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  
 0.936
EED31634.1
Phosphoglycerate mutase 1; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.930
NOR53_615
[R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
  
  
  0.880
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
     
 0.868
EED31633.1
[E] COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
 
 0.862
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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