Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NOR53_445Phage integrase:Chain length determinant protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (508 aa)    
Predicted Functional Partners:
EED33978.1
Putative UDP-glucose lipid carrier transferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
 
 0.928
EED33965.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
 
 0.924
EED33931.1
Conserved hypothetical protein.
 
 0.906
EED31677.1
[M] COG1596 Periplasmic protein involved in polysaccharide export.
  
 0.777
NOR53_57
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; [G] COG0662 Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.765
NOR53_682
Eight transmembrane protein EpsH; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.754
EED33962.1
Uncharacterized protein, PEP-CTERM system associated.
 
  
  0.749
prsT
Putative PEP-CTERM system TPR-repeat lipoprotein; [R] COG0457 FOG: TPR repeat.
 
     0.746
EED33970.1
Conserved hypothetical protein.
 
     0.733
EED33964.1
Polysaccharide chain length determinant protein; [L] COG0419 ATPase involved in DNA repair.
  
     0.727
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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