Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NOR53_460[S] COG5345 Uncharacterized protein conserved in bacteria. (365 aa)    
Predicted Functional Partners:
NOR53_575
[S] COG2847 Uncharacterized protein conserved in bacteria.
       0.779
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
    0.543
EED32688.1
RDD; [S] COG1714 Predicted membrane protein/domain.
  
     0.532
dsbD
Thiol:disulfide interchange protein DsbD; [O] COG0785 Cytochrome c biogenesis protein.
       0.523
EED31911.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.507
cycH
Cytochrome c-type biogenesis protein CycH; [O] COG4235 Cytochrome c biogenesis factor.
  
     0.485
EED31494.1
LytB protein; [M] COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
     0.460
EED33091.1
Putative glutaredoxin domain family protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.444
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.426
EED31464.1
[L] COG2818 3-methyladenine DNA glycosylase.
  
     0.417
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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