Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NOR53_463Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase. (356 aa)    
Predicted Functional Partners:
rimK_2
[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.
 
     0.909
rimK_1
Ribosomal protein S6 modification protein, C terminal domain; [O] COG4067 Uncharacterized protein conserved in archaea.
 
     0.765
rimK
alpha-L-glutamate ligase, RimK family; [M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; Belongs to the RimK family.
 
     0.723
NOR53_877
ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.
 
     0.597
EED33695.1
Putative aminotransferase class III (putative 4-aminobutyrate aminotransferase); [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.582
EED32226.1
[E] COG0070 Glutamate synthase domain 3.
     
  0.566
EED33800.1
[E] COG0006 Xaa-Pro aminopeptidase.
    
 0.557
EED31875.1
[E] COG0006 Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
    
 0.557
putA_1
Bifunctional PutA protein; [C] COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase.
     
  0.537
NOR53_91
Tyrosine decarboxylase 1; [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins.
     
  0.531
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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