STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_466Glycosyl hydrolase, family 3; [G] COG1472 Beta-glucosidase-related glycosidases. (573 aa)    
Predicted Functional Partners:
NOR53_638
Putative D-aminoacylase; [F] COG0044 Dihydroorotase and related cyclic amidohydrolases.
    
  0.771
EED31372.1
Glycosyl hydrolase, family 16.
 
 
 0.728
NOR53_998
Putative alpha-galactosidase 2 (Melibiase); [G] COG3345 Alpha-galactosidase.
  
  
 0.569
NOR53_582
Hypothetical protein.
       0.545
EED32254.1
Conserved hypothetical protein.
  
  
 0.472
EED33428.1
[G] COG1874 Beta-galactosidase.
 
  
 0.456
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
  
  
 0.445
glk_2
Glucokinase/transcriptional regulator, RpiR family, fusion; [M] COG0794 Predicted sugar phosphate isomerase involved in capsule formation.
 
 
 0.444
EED33559.1
Tryptophan halogenase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.439
NOR53_964
Hyaluronidase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
 0.434
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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