STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_520Na-Ca exchanger/integrin-beta4; [R] COG3291 FOG: PKD repeat. (390 aa)    
Predicted Functional Partners:
EED31888.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
    
 
 0.871
EED32033.1
Conserved hypothetical protein.
 
 
  0.557
EED33721.1
[J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
 0.555
NOR53_566
Conserved hypothetical protein; [O] COG0625 Glutathione S-transferase.
       0.528
EED31793.1
Peptidase S8 and S53, subtilisin, kexin, sedolisin; [O] COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
  
  0.510
tesA
acyl-CoA thioesterase I; [E] COG2755 Lysophospholipase L1 and related esterases.
    
  0.499
EED33170.1
Conserved hypothetical protein.
  
 
  0.478
amiB
[M] COG0860 N-acetylmuramoyl-L-alanine amidase.
    
 0.469
NOR53_784
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
  
 0.464
EED31482.1
Sigma-70, region 4 type 2; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
  0.447
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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