NOR53_534 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NOR53_534

Conserved domain protein; [O] COG3187 Heat shock protein. (333 aa)

Predicted Functional Partners:

pufL

0.597

pufM

0.597

puhA

0.597

EED32380.1

0.597

EED31080.1

0.575

fliL

0.455

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED31080.1	NOR53_534	NOR53_2859	NOR53_534	Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Conserved domain protein; [O] COG3187 Heat shock protein.	0.575
EED32380.1	NOR53_534	NOR53_1498	NOR53_534	Antenna complex alpha/beta subunit domain protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Conserved domain protein; [O] COG3187 Heat shock protein.	0.597
EED32380.1	pufL	NOR53_1498	NOR53_1087	Antenna complex alpha/beta subunit domain protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Photosynthetic reaction center L subunit; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the reaction center PufL/M/PsbA/D family.	0.999
EED32380.1	pufM	NOR53_1498	NOR53_1296	Antenna complex alpha/beta subunit domain protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.999
EED32380.1	puhA	NOR53_1498	NOR53_1400	Antenna complex alpha/beta subunit domain protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Photosynthetic reaction center H subunit.	0.998
NOR53_534	EED31080.1	NOR53_534	NOR53_2859	Conserved domain protein; [O] COG3187 Heat shock protein.	Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.575
NOR53_534	EED32380.1	NOR53_534	NOR53_1498	Conserved domain protein; [O] COG3187 Heat shock protein.	Antenna complex alpha/beta subunit domain protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.597
NOR53_534	fliL	NOR53_534	NOR53_191	Conserved domain protein; [O] COG3187 Heat shock protein.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.455
NOR53_534	pufL	NOR53_534	NOR53_1087	Conserved domain protein; [O] COG3187 Heat shock protein.	Photosynthetic reaction center L subunit; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the reaction center PufL/M/PsbA/D family.	0.597
NOR53_534	pufM	NOR53_534	NOR53_1296	Conserved domain protein; [O] COG3187 Heat shock protein.	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.597
NOR53_534	puhA	NOR53_534	NOR53_1400	Conserved domain protein; [O] COG3187 Heat shock protein.	Photosynthetic reaction center H subunit.	0.597
fliL	NOR53_534	NOR53_191	NOR53_534	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Conserved domain protein; [O] COG3187 Heat shock protein.	0.455
pufL	EED32380.1	NOR53_1087	NOR53_1498	Photosynthetic reaction center L subunit; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the reaction center PufL/M/PsbA/D family.	Antenna complex alpha/beta subunit domain protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
pufL	NOR53_534	NOR53_1087	NOR53_534	Photosynthetic reaction center L subunit; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the reaction center PufL/M/PsbA/D family.	Conserved domain protein; [O] COG3187 Heat shock protein.	0.597
pufL	pufM	NOR53_1087	NOR53_1296	Photosynthetic reaction center L subunit; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the reaction center PufL/M/PsbA/D family.	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.998
pufL	puhA	NOR53_1087	NOR53_1400	Photosynthetic reaction center L subunit; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the reaction center PufL/M/PsbA/D family.	Photosynthetic reaction center H subunit.	0.999
pufM	EED32380.1	NOR53_1296	NOR53_1498	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Antenna complex alpha/beta subunit domain protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
pufM	NOR53_534	NOR53_1296	NOR53_534	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Conserved domain protein; [O] COG3187 Heat shock protein.	0.597
pufM	pufL	NOR53_1296	NOR53_1087	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Photosynthetic reaction center L subunit; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the reaction center PufL/M/PsbA/D family.	0.998
pufM	puhA	NOR53_1296	NOR53_1400	Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Photosynthetic reaction center H subunit.	0.999