Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NOR53_537Linalool 8-monooxygenase; [Q] COG2124 Cytochrome P450. (410 aa)    
Predicted Functional Partners:
NOR53_515
Ferredoxin; [C] COG2871 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF.
 
 0.886
EED32850.1
Reductive dehalogenase; [C] COG1600 Uncharacterized Fe-S protein.
  
 0.745
EED33674.1
[I] COG0657 Esterase/lipase.
 
 0.689
polA
DNA polymerase I superfamily protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.678
EED31155.1
Putative beta-carotene hydroxylase; [I] COG3239 Fatty acid desaturase.
 
  
  0.676
NOR53_624
[S] COG3012 Uncharacterized protein conserved in bacteria; Belongs to the UPF0225 family.
       0.661
NOR53_302
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
    
  0.626
EED33259.1
Hydrolase, alpha/beta fold family; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
 
  0.620
EED32666.1
[IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
  0.603
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
  0.596
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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