Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_561DoxX; [S] COG2259 Predicted membrane protein. (133 aa)    
Predicted Functional Partners:
NOR53_565
[S] COG2501 Uncharacterized conserved protein.
 
     0.808
EED33312.1
[S] COG3220 Uncharacterized protein conserved in bacteria.
  
  
 0.647
NOR53_620
Conserved hypothetical protein.
       0.620
EED33311.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
  
 0.611
pacL
Cation-transporting ATPase, E1-E2 family; [P] COG2217 Cation transport ATPase.
   
  0.521
EED32280.1
Cytochrome c, class I; [C] COG3245 Cytochrome c5.
     
  0.499
gidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
    
 
 0.437
EED34028.1
Conserved hypothetical protein; [S] COG3016 Uncharacterized iron-regulated protein.
     
  0.435
NOR53_585
TPR repeat-containing protein; [S] COG5616 Predicted integral membrane protein.
       0.428
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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