NOR53_565 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NOR53_565

[S] COG2501 Uncharacterized conserved protein. (70 aa)

Predicted Functional Partners:

NOR53_561

0.808

recF

0.773

NOR53_620

0.628

dnaN

0.596

NOR53_585

0.428

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NOR53_561	NOR53_565	NOR53_561	NOR53_565	DoxX; [S] COG2259 Predicted membrane protein.	[S] COG2501 Uncharacterized conserved protein.	0.808
NOR53_561	NOR53_585	NOR53_561	NOR53_585	DoxX; [S] COG2259 Predicted membrane protein.	TPR repeat-containing protein; [S] COG5616 Predicted integral membrane protein.	0.428
NOR53_561	NOR53_620	NOR53_561	NOR53_620	DoxX; [S] COG2259 Predicted membrane protein.	Conserved hypothetical protein.	0.620
NOR53_565	NOR53_561	NOR53_565	NOR53_561	[S] COG2501 Uncharacterized conserved protein.	DoxX; [S] COG2259 Predicted membrane protein.	0.808
NOR53_565	NOR53_585	NOR53_565	NOR53_585	[S] COG2501 Uncharacterized conserved protein.	TPR repeat-containing protein; [S] COG5616 Predicted integral membrane protein.	0.428
NOR53_565	NOR53_620	NOR53_565	NOR53_620	[S] COG2501 Uncharacterized conserved protein.	Conserved hypothetical protein.	0.628
NOR53_565	dnaN	NOR53_565	NOR53_3590	[S] COG2501 Uncharacterized conserved protein.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.596
NOR53_565	recF	NOR53_565	NOR53_3004	[S] COG2501 Uncharacterized conserved protein.	DNA replication, recombinaison and repair protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.	0.773
NOR53_585	NOR53_561	NOR53_585	NOR53_561	TPR repeat-containing protein; [S] COG5616 Predicted integral membrane protein.	DoxX; [S] COG2259 Predicted membrane protein.	0.428
NOR53_585	NOR53_565	NOR53_585	NOR53_565	TPR repeat-containing protein; [S] COG5616 Predicted integral membrane protein.	[S] COG2501 Uncharacterized conserved protein.	0.428
NOR53_620	NOR53_561	NOR53_620	NOR53_561	Conserved hypothetical protein.	DoxX; [S] COG2259 Predicted membrane protein.	0.620
NOR53_620	NOR53_565	NOR53_620	NOR53_565	Conserved hypothetical protein.	[S] COG2501 Uncharacterized conserved protein.	0.628
dnaN	NOR53_565	NOR53_3590	NOR53_565	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	[S] COG2501 Uncharacterized conserved protein.	0.596
dnaN	recF	NOR53_3590	NOR53_3004	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA replication, recombinaison and repair protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.	0.973
recF	NOR53_565	NOR53_3004	NOR53_565	DNA replication, recombinaison and repair protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.	[S] COG2501 Uncharacterized conserved protein.	0.773
recF	dnaN	NOR53_3004	NOR53_3590	DNA replication, recombinaison and repair protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.973