STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_570Protein YccU; [C] COG1042 Acyl-CoA synthetase (NDP forming). (142 aa)    
Predicted Functional Partners:
metY
O-acetylhomoserine sulfhydrylase; [E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
   
  0.938
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
 
   
  0.820
NOR53_600
enoyl-CoA hydratase/isomerase family protein; [H] COG0447 Dihydroxynaphthoic acid synthase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.774
fur
[P] COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
  
    0.730
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.685
metC
[E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
 
   
  0.592
cysM
Cysteine synthase B; [E] COG0498 Threonine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
  0.572
EED32635.1
Hypothetical protein; [O] COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; alpha/beta hydrolase fold.
    
  0.544
EED32324.1
Putative aralkylamine dehydrogenase heavy chain.
    
  0.543
NOR53_601
Glycosyl hydrolase, BNR repeat-containing protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.520
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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