Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NOR53_59Photolyase; [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase. (502 aa)    
Predicted Functional Partners:
NOR53_147
[R] COG0661 Predicted unusual protein kinase; ABC-1.
 
     0.781
phrB
[L] COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
   
 0.766
NOR53_115
ABC-1 domain protein; [R] COG0661 Predicted unusual protein kinase.
 
     0.741
NOR53_262
[L] COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
   
 0.620
EED33047.1
DNA photolyase; [L] COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
   
 0.605
EED33181.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.588
EED32138.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.552
EED33513.1
Oxidoreductase, short chain dehydrogenase/reductase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
     0.530
NOR53_4
acyl-CoA dehydrogenase, C-terminal domain; [I] COG1960 Acyl-CoA dehydrogenases.
       0.494
EED32183.1
[E] COG1231 Monoamine oxidase.
 
   
 0.487
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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